Informatic Tools

Download / Query

LIS Datastore: Browser interface to all of the files in the Legume Information System.
Cicer Intermine: LIS InterMines: one mine per genus including genetic data, and an overall LegumeMine with genome annotations. Tools include a powerful query engine.
DSCensor Data Overviews: Overviews of data characteristics at LIS: genome assembly sizes, gene counts, BUSCO coverage, etc.

Cicer SequenceServer BLAST: Run BLASTs against Cicer genomes, CDSes, and proteins
Funnotate: Annotate Your Sequences: Functional annotation of protein or nucleotide sequences, and placement into gene trees

Cicer JBrowse2: View Cicer Genomes and Annotations in JBrowse2.
Genome Context Viewer: Browser for dynamically discovering and viewing genomic synteny across selected species.
Cicer WebApollo: Cicer WebApollo Instance for Curated Annotations
ZZBrowse GWAS/QTL: Interactive visualization of multiple GWAS and QTL data sets, using synteny to identify potentially conserved association regions between species.
LIS Germplasm GIS Viewer: View GIS location information for legume accessions.
Conekt Comparative Expression: Conekt is a tool for comparative gene expression analysis.
Gene Family Search: Functional keyword search for gene families